Department of Computer Science & Engineering, University of California, San Diego 9500 Gilman Drive M/C 0404, La Jolla, CA 92093-0404 Phone: (858) 822-2496 E-mail:dima@cs.ucsd.edu RESUME     RESEARCH     SOFTWARE     TEACHING     PERSONAL ISBRA 2008: International Symposium on Bioinformatics Research and Applications